Title | Elucidation of the mechanism of polysaccharide cleavage by chondroitin AC lyase from Flavobacterium heparinum |
Publication Type | Journal Article |
Year of Publication | 2002 |
Authors | Rye, CS, Withers, SG |
Journal | JOURNAL OF THE AMERICAN CHEMICAL SOCIETY |
Volume | 124 |
Pagination | 9756-9767 |
Date Published | AUG 21 |
ISSN | 0002-7863 |
Abstract | Chondroitin AC lyase from Flavobacterium heparinum degrades chondroitin sulfate glycosaminoglycans via an elimination mechanism resulting in disaccharides or oligosaccharides with Delta4,5-unsaturated uronic acid residues at their nonreducing end. Mechanistic details concerning the ordering of the bond-breaking and -forming steps of this enzymatic reaction are nonexistent, mainly due to the inhomogeneous nature of the polymeric substrates. The creation of a new class of synthetic substrates for this enzyme has allowed the measurement of defined and reproducible k(cat) and K-m values and has expanded the range of mechanistic studies that can be performed. The primary deuterium kinetic isotope effect upon k(cat)/K-m for the abstraction of the proton a to the carboxylic acid was measured to be 1.67 +/- 0.07, showing that deprotonation occurs in a rate-limiting step. Using substrates with leaving groups of differing reactivity, a flat linear free energy relationship was produced, indicating that the C4-O4 bond is not broken in a rate-determining step. Taken together, these results strongly suggest a stepwise mechanism. Consistent with this was the measurement of a secondary deuterium kinetic isotope effect upon k(cat)/K-m of 1.01 +/- 0.03 on a 4-\{H-2\}-substrate, indicating that no sp(2) character is developed at C4 during the rate-limiting step, thereby ruling out a concerted syn-elimination. |
DOI | 10.1021/ja020627c |
